Skip to main content

Table 2 Constants of the repressilator model

From: A straightforward method to compute average stochastic oscillations from data samples

Constant Value  
average mRNA lifetime (t_a v e) τ 1/2,m R N A /l n(2) =2.89 m i n
mRNA decay rate (k d_m R N A) l n(2)/τ 1/2,m R N A =0.347 m i n −1
protein decay rate (k d_p r o t): l n(2)/τ 1/2,p r o t =0.0693 m i n −1
transcription rate (a_t r): t p s_a c t i v e·60 =29.97 t r a n s c r i p t s/m i n
transcription rate (repressed) (a0_t r): t p s_r e p r·60 =0.03 t r a n s c r i p t s/m i n
translation rate (k_t l): e f f·k d_m R N A =6.93 p r o t e i n s/(m R N A·m i n)