Table 2 Constants of the repressilator model
From: A straightforward method to compute average stochastic oscillations from data samples
Constant | Value | Â |
|---|---|---|
average mRNA lifetime (t_a v e) | Ï 1/2,m R N A /l n(2) | =2.89 m i n |
mRNA decay rate (k d_m R N A) | l n(2)/Ï 1/2,m R N A | =0.347 m i n â1 |
protein decay rate (k d_p r o t): | l n(2)/Ï 1/2,p r o t | =0.0693 m i n â1 |
transcription rate (a_t r): | t p s_a c t i v e·60 | =29.97 t r a n s c r i p t s/m i n |
transcription rate (repressed) (a0_t r): | t p s_r e p r·60 | =0.03 t r a n s c r i p t s/m i n |
translation rate (k_t l): | e f f·k d_m R N A | =6.93 p r o t e i n s/(m R N A·m i n) |