Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data

BMC Bioinformatics

Table 2 Scores of models from normal B-cell Hi-C data of Lieberman et al. [4]

Chromosome	Contact satisfied score (%)	Non-contact satisfied score (%)	IF satisfied score (%)	Avg. of Dist. of unsatisfied contacts (μm)	Avg. of Dist. of unsatisfied non-contacts (μm)
1	79	79	77	11.26	3.95
2	78	78	77	12.36	3.89
3	75	75	78	11.95	3.81
4	83	84	81	10.29	4.49
5	82	85	80	10.98	4.27
6	79	79	80	10.88	4.33
7	79	79	78	12.12	3.54
8	82	85	80	10.47	4.34
9	82	86	80	12.17	4.05
10	79	80	78	11.61	3.97
11	77	77	77	11.52	3.75
12	79	78	80	12.41	4.22
13	80	81	79	10.28	4.43
14	75	75	78	13.21	4.31
15	79	81	78	11.48	4.49
16	83	81	81	10.07	4.08
17	80	79	79	10.11	4.73
18	77	78	78	11.4	3.24
19	83	86	80	11.44	4.34
20	78	78	79	11.97	3.5
21	91	89	85	11.28	5.05
22	89	85	84	9.38	4.69
Average	80.41	80.82	79.41	11.30	4.16

Same legend as Table 1 only using 22 chromosomes from the Hi-C data of Lieberman et al. [4] and including additional columns showing the average distance of unsatisfied contacts and the average distance of unsatisfied non-contacts

ISSN: 1471-2105