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Table 1 Main effects from the factorial Analysis of Variance (ANOVA). For the full list of all possible interaction terms please see the Additional file 1: Supplementary file ANOVA_FullResults.xlsx (the residual term here is from the full ANOVA)

From: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

Source of variation d.f. s.s. m.s. v.r. F prob. perm prob. Percentage SS
Replicate stratum 1 0.01693 0.01693 8.82    
Replicate.*Units* stratum        
Length 5 40.79358 8.15872 4247.34 0.000 0.001 1.18
Assembly 2 1516.31545 758.15772 394688.33 0.000 0.001 43.90
Mapper 1 265.90685 265.90685 138428.09 0.000 0.001 7.70
Stringency 1 371.94519 371.94519 193630.46 0.000 0.001 10.77
MAPQ 1 55.69223 55.69223 28992.74 0.000 0.001 1.61
Variant caller 1 73.45412 73.45412 38239.38 0.000 0.001 2.13
Depth filter 1 5.92562 5.92562 3084.81 0.000 0.001 0.17
Residual 575 1.10452 0.00192