|  |  | Length | 50 | 100 | 150 | 300 | 500 | 1000 |
---|---|---|---|---|---|---|---|---|---|
Assembly | Mapper | Variant caller | MAPQ | Â | Â | Â | Â | Â | Â |
Allpaths | Bowtie2 | FreeBayes | 0 | 3.75 | 3.81 | 3.84 | 4.00 | 3.90 | 3.95 |
Allpaths | BWA | FreeBayes | 0 | 3.68 | 3.72 | 3.75 | 3.77 | 3.77 | 3.73 |
Allpaths | Bowtie2 | GATK | 0 | 3.34 | 3.37 | 3.45 | 3.61 | 3.53 | 3.65 |
Allpaths | BWA | GATK | 0 | 1.74 | 1.78 | 1.84 | 1.90 | 1.91 | 1.96 |
Control | Bowtie2 | FreeBayes | 0 | 0.00 | 0.00 | 0.00 | 2.76 | 0.63 | 0.08 |
Control | BWA | FreeBayes | 0 | 2.80 | 1.98 | 1.33 | 0.52 | 0.08 | 0.44 |
Control | Bowtie2 | GATK | 0 | 0.00 | 0.00 | 0.00 | 2.05 | 0.29 | 0.15 |
Control | BWA | GATK | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Velvet | Bowtie2 | FreeBayes | 0 | 3.65 | 3.82 | 3.88 | 4.10 | 3.92 | 3.92 |
Velvet | BWA | FreeBayes | 0 | 3.61 | 3.64 | 3.71 | 3.76 | 3.76 | 3.75 |
Velvet | Bowtie2 | GATK | 0 | 2.40 | 3.08 | 3.27 | 3.60 | 3.41 | 3.57 |
Velvet | BWA | GATK | 0 | 1.14 | 1.48 | 1.62 | 1.70 | 1.78 | 1.85 |
Allpaths | Bowtie2 | FreeBayes | 20 | 3.26 | 3.34 | 3.42 | 3.61 | 3.57 | 3.68 |
Allpaths | BWA | FreeBayes | 20 | 1.72 | 1.77 | 1.81 | 1.87 | 1.89 | 1.90 |
Allpaths | Bowtie2 | GATK | 20 | 3.50 | 3.56 | 3.62 | 3.76 | 3.65 | 3.74 |
Allpaths | BWA | GATK | 20 | 1.87 | 1.92 | 1.96 | 2.01 | 2.00 | 2.02 |
Control | Bowtie2 | FreeBayes | 20 | 0.00 | 0.00 | 0.00 | 1.95 | 1.34 | 1.23 |
Control | BWA | FreeBayes | 20 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Control | Bowtie2 | GATK | 20 | 0.00 | 0.00 | 0.00 | 2.15 | 1.16 | 1.02 |
Control | BWA | GATK | 20 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Velvet | Bowtie2 | FreeBayes | 20 | 2.48 | 3.12 | 3.34 | 3.64 | 3.54 | 3.66 |
Velvet | BWA | FreeBayes | 20 | 1.20 | 1.50 | 1.64 | 1.74 | 1.80 | 1.85 |
Velvet | Bowtie2 | GATK | 20 | 2.52 | 3.17 | 3.37 | 3.69 | 3.52 | 3.67 |
Velvet | BWA | GATK | 20 | 1.24 | 1.52 | 1.66 | 1.75 | 1.84 | 1.90 |
Sed = 0.02191 | Â | Â | Â | Â | Â | Â | Â | Â | Â |