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Table 5 Assembly type, mapper, and mapping stringency interaction. L o g 10-transformed means for the interaction between assembly type, mapper and mapping stringency

From: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

 

Mapper

Bowtie2

 

BWA-SW

 
 

Stringency

Relaxed

Strict

Relaxed

Strict

Assembly

     

Allpaths-LG

 

3.7976

3.4439

3.8151

0.8750

Control

 

1.0996

0.1334

0.3349

0.2608

Velvet

 

3.4369

3.4256

3.3796

0.9063

Sed = 0.00633

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