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Table 5 Assembly type, mapper, and mapping stringency interaction. L o g 10-transformed means for the interaction between assembly type, mapper and mapping stringency

From: An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome

  Mapper Bowtie2   BWA-SW  
  Stringency Relaxed Strict Relaxed Strict
Assembly      
Allpaths-LG   3.7976 3.4439 3.8151 0.8750
Control   1.0996 0.1334 0.3349 0.2608
Velvet   3.4369 3.4256 3.3796 0.9063
Sed = 0.00633