Table 3 Performance on HIV plasmid mixture dataset 1

QQ-SNV_D

QQ-SNV_HS-P80 ^a

LoFreq

ShoRAH

V-Phaser 2

Variant %

sens.^b

sens.^b

sens.^b

sens.^b

sens.^b

 88.889 %

57/61

60/61

59/61

56/61

20/61

 10 %

44/50

49/50

47/50

45/50

13/50

 1 %

28/34

30/34

23/34

26/34

10/34

 0.1 %

2/42

20/42

0/42

7/42

22/42

 0.01 %

0/40

1/40

0/40

3/40

8/40

 0.001 %

0/30

0/30

0/30

0/30

0/30

FP^c

FP^c

FP^c

FP^c

FP^c

2

4

0

6

2

time^de

time^de

time^df

time^dg

time^dg

14m11s

14m11s

53m24s

6h25m

33m5s