Table 2 Comparing AlignWise and other ORF finding software
From: AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts
Average | Number of ORFs found | ||||
|---|---|---|---|---|---|
Program | run time | Human EST | Rat cDNA | FaBox DNA | Random DNA |
AlignFS | 02:12:54 | 633 | 990 | 0 | 0 |
Genewise | 01:56:41 | 633 | 990 | 0 | 0 |
AlignWise | 02:21:29 | 633 | 990 | 0 | 0 |
AlignWise (fast) | 00:27:12 | 627 | 987 | 0 | 0 |
AlignWise (fastest) | 00:03:46 | 627 | 987 | 0 | 0 |
ESTscan | 00:00:01 | 526 | 971 | 835 | 366 |
OrfPredictor | 01:26:06 | 995 | 1000 | 999 | 999 |
TransDecoder | 00:00:17 | 299 | 924 | 0 | 0 |
TransDecoder (pfam) | 00:37:11 | 339 | 950 | 0 | 0 |