Table 4 Analysing the newt transcriptome
From: AlignWise: a tool for identifying protein-coding sequence and correcting frame-shifts
Total ORFs | ORFs with putative frame-shift | |||||
|---|---|---|---|---|---|---|
Program | Top HSP used | No changes made | FSC made | Top HSP used | No changes made | FSC made |
AlignFS | 5375 | 4793 | 3764 | 1823 | 198 | 1519 |
Genewise | 8281 | 5652 | 407 | 3133 | ||
AlignWise | 4216 | 6077 | 3639 | 1438 | 281 | 1821 |
ESTscan | 8579 | 5589 | 694 | 2917 | ||