Table 4 Performance on close reference genomes with different similarities for the assembly of E.coli simulated reads data
From: misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Strain | Similarity compared to E.coli K12 MG1655 | #Identified errors | #True errors | Precision |
|---|---|---|---|---|
E.coli O157:H7 str. Sakai | 0.7041 | 46 | 34 | 0.7391 |
E.coli HS | 0.8356 | 38 | 32 | 0.8421 |
E.coli K12 DH10B | 0.94 | 30 | 29 | 0.9667 |
E.coli K12 W3110 | 0.9956 | 30 | 30 | 1.0 |