Table 1 Average SP and TC values of MSAIndelFR and other multiple alignment algorithms for the benchmarks, BAliBASE 3.0, OXBENCH, PREFAB 4.0 and SABRE (SABmark 1.65)
BAliBASE | OXBENCH | PREFAB | SABRE | |||||
|---|---|---|---|---|---|---|---|---|
MSA algorithm | SP (%) | TC (%) | SP (%) | TC (%) | SP (%) | TC (%) | SP (%) | TC (%) |
MSAIndelFR | 86.23 | 57.56 | 91.88 | 83.83 | 59.35 | 59.35 | 53.59 | 34.38 |
MSAProbs | 80.21 | (54.93) | (89.39) | (79.78) | (57.52) | (57.52) | (51.55) | (25.21) |
MAFFT | 84.86 | 54.50 | 88.22 | 77.98 | 53.93 | 53.93 | 50.14 | 24.33 |
MUSCLE | 82.11 | 47.41 | 88.66 | 78.93 | 55.74 | 55.74 | 46.33 | 20.80 |
Clustal Omega | 81.94 | 50.35 | 88.05 | 77.76 | 55.96 | 55.96 | 45.11 | 19.58 |
Kalign2 | 80.06 | 43.68 | 87.55 | 77.30 | 56.33 | 56.33 | 41.64 | 18.91 |
Clustal W2 | 75.86 | 39.37 | 87.94 | 77.00 | 56.05 | 56.05 | 40.38 | 15.98 |
ProbCons | (85.85) | 54.81 | 88.86 | 78.80 | 56.44 | 56.44 | 51.27 | 24.97 |
Probalign | 85.45 | 53.63 | 89.08 | 79.52 | 56.63 | 56.63 | 50.33 | 23.67 |