Table 2 P-values obtained by the Wilcoxon matched-pair signed-rank test between MSAIndelFR and the other multiple alignment algorithms on the benchmarks, BAliBASE 3.0, OXBENCH, PREFAB 4.0 and SABRE (SABmark 1.65) using SP scores
MSA algorithm | BAliBASE | OXBENCH | PREFAB | SABRE |
|---|---|---|---|---|
MSAProbs | 4.52×10−3 | 0.128 | 3.2×10−3 | 0.344 |
MAFFT | 2.82×10−8 | 1.78×10−7 | 9.23×10−5 | 4.24×10−2 |
MUSCLE | 2.57×10−11 | 9.32×10−4 | 7.7×10−8 | 1.0×10−2 |
Clustal Omega | 2.51×10−14 | 1.96×10−5 | 5.4×10−5 | 3.65×10−2 |
Kalign2 | 1.79×10−7 | 1.63×10−6 | 1.06×10−6 | 1.2×10−4 |
Clustal W2 | 7.76×10−17 | 3.4×10−5 | 3.54×10−7 | 3.25×10−5 |
ProbCons | 5.49×10−3 | 0.243 | 6.17×10−8 | 0.398 |
Probalign | 5.67×10−3 | 0.215 | 4.70×10−9 | 0.388 |