Table 3 P-values obtained by the Wilcoxon matched-pair signed-rank test between MSAIndelFR and the other multiple alignment algorithms on the benchmarks, BAliBASE 3.0, OXBENCH, PREFAB 4.0 and SABRE (SABmark 1.65) using TC scores
MSA algorithm | BAliBASE | OXBENCH | PREFAB | SABRE |
|---|---|---|---|---|
MSAProbs | 6.09×10−2 | 0.298 | 3.2×10−3 | 0.125 |
MAFFT | 6.97×10−7 | 1.20×10−5 | 9.23×10−5 | 1.86×10−2 |
MUSCLE | 2.18×10−11 | 7.41×10−3 | 7.7×10−8 | 5.10×10−2 |
Clustal Omega | 4.11×10−8 | 1.29×10−4 | 5.4×10−5 | 8.47×10−3 |
Kalign2 | 5.46×10−6 | 1.36×10−6 | 1.06×10−6 | 3.99×10−3 |
Clustal W2 | 3.86×10−11 | 3.47×10−6 | 3.54×10−7 | 2.50×10−4 |
ProbCons | 2.48×10−2 | 0.694 | 6.17×10−8 | 0.288 |
Probalign | 8.92×10−2 | 0.377 | 4.70×10−9 | 0.147 |