Reads2Type: a web application for rapid microbial taxonomy identification

BMC Bioinformatics

Table 1 Accuracy test on in-house raw reads

Three E. coli raw read files were misidentified as one Shigella dysenteriae and two Shigella flexneri. One S. aureus raw read file was misidentified as Staphylococcus epidermidis. One Salmonella enterica raw reads file was mispredicted as S. aureus, which was subsequently discovered to be caused by contamination. Also, two paired-end files were considered as two different files

ISSN: 1471-2105