Table 3 Numbers of hypo- and hyper-methylated loci identified by the proposed Bayesian method and logistic regression method for the real data. FDR is controlled at levels 0.01, 0.02, 0.03 and 0.05 for logistic regression
| Â | Hypo- | Hyper- | Â |
|---|---|---|---|
| Â | methylation | methylation | Â |
The proposed Bayesian method | 31,328 | 21,270 | Â |
Logistic Regression: FDR controlled at 0.01 | 20,527 | 15,166 | Â |
Logistic Regression: FDR controlled at 0.02 | 24,309 | 17,758 | Â |
Logistic Regression: FDR controlled at 0.03 | 27,172 | 19,483 | Â |
Logistic Regression: FDR controlled at 0.05 | 31,863 | 22,419 | Â |