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Table 5 Number of genes associated with hypo- and hyper-methylated loci uniquely identified by the proposed Bayesian method or the logistic regression method, or identified by both methods. The nominal FDR levels of the logistic regression model are 0.01,0.02, 0.03 and 0.05. In the table, 0, 1 and 2 represent equal-, hypo- and hyper-methylated loci respectively

From: A full Bayesian partition model for identifying hypo- and hyper-methylated loci from single nucleotide resolution sequencing data

      

Logistic regression

 
  

FDR 0.01

 

FDR 0.02

 

FDR 0.03

 

FDR 0.05

  

0

1

2

 

0

1

2

 

0

1

2

 

0

1

2

Bayesian method

0

 

1

3

  

36

52

  

82

132

  

224

391

 

1

745

2,293

0

 

475

2,563

0

 

329

2,709

0

 

129

2,909

0

 

2

1,379

0

4,043

 

920

0

4,502

 

648

0

4,774

 

365

0

5,057