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Table 2 Analyzed 66 species with rhodophytic plastids

From: Algorithms for reconstruction of chromosomal structures

Locus in GenBank Species #prot #clust #sing
NC_024079.1 Asterionella formosa 134 129 0
NC_024080.1 Asterionellopsis glacialis 145 138 1
NC_012898.1 Aureococcus anophagefferens 105 105 0
NC_012903.1 Aureoumbra lagunensis 110 110 0
NC_011395.1 Babesia bovis T2Bo 32 22 7
NC_021075.1 Calliarthron tuberculosum 201 200 1
NC_025313.1 Cerataulina daemon 132 130 0
NC_025310.1 Chaetoceros simplex 131 128 0
NC_020795.1 Chondrus crispus 204 204 0
NC_026522.1 Choreocolax polysiphoniae 71 71 0
NC_014340.2 Chromera velia 78 51 24
NC_014345.1 Chromerida sp. RM11 81 69 5
NC_024081.1 Coscinodiscus radiatus 139 130 0
NC_013703.1 Cryptomonas paramecium 82 79 3
NC_004799.1 Cyanidioschyzon merolae strain 10D 207 189 18
NC_001840.1 Cyanidium caldarium 197 186 11
NC_024082.1 Cylindrotheca closterium 161 141 13
NC_024083.1 Didymosphenia geminata 130 128 0
NC_014287.1 Durinskia baltica 129 127 0
NC_013498.1 Ectocarpus siliculosus 148 143 1
NC_004823.1 Eimeria tenella strain Penn State 28 21 7
NC_007288.1 Emiliania huxleyi 119 112 7
NC_024928.1 Eunotia naegelii 160 136 2
NC_015403.1 Fistulifera solaris 135 130 1
NC_016735.1 Fucus vesiculosus 139 139 0
NC_024665.1 Galdieria sulphuraria 182 181 1
NC_023785.1 Gracilaria salicornia 202 200 2
NC_006137.1 Gracilaria tenuistipitata var. liui 203 201 2
NC_021618.1 Grateloupia taiwanensis 233 201 32
NC_000926.1 Guillardia theta 147 142 5
NC_010772.1 Heterosigma akashiwo 156 139 3
NC_014267.1 Kryptoperidinium foliaceum 139 132 6
NC_027093.1 Lepidodinium chlorophorum 62 52 7
NC_024084.1 Leptocylindrus danicus 132 130 0
NC_022667.1 Leucocytozoon caulleryi 30 30 0
NC_024085.1 Lithodesmium undulatum 138 129 0
NC_020014.1 Nannochloropsis gaditana 119 116 3
NC_022259.1 Nannochloropsis granulata 125 123 0
NC_022262.1 Nannochloropsis limnetica 124 123 0
NC_022263.1 Nannochloropsis oceanica 126 123 1
NC_022260.1 Nannochloropsis oculata 126 123 0
NC_022261.1 Nannochloropsis salina 123 123 0
NC_001713.1 Odontella sinensis 140 128 9
NC_020371.1 Pavlova lutheri 111 102 9
NC_016703.2 Phaeocystis antarctica 108 108 0
NC_021637.1 Phaeocystis globosa 108 108 0
NC_008588.1 Phaeodactylum tricornutum 132 130 0
NC_023293.1 Plasmodium chabaudi chabaudi 31 31 0
NC_000925.1 Porphyra purpurea 209 209 0
NC_023133.1 Porphyridium purpureum 224 183 40
NC_021189.1 Pyropia haitanensis 211 210 1
NC_024050.1 Pyropia perforata 209 207 2
NC_007932.1 Pyropia yezoensis 209 206 3
NC_025311.1 Rhizosolenia imbricata 135 123 1
NC_009573.1 Rhodomonas salina 146 143 3
NC_025312.1 Roundia cardiophora 140 126 0
NC_018523.1 Saccharina japonica 139 139 0
NC_014808.1 Thalassiosira oceanica CCMP1005 142 126 1
NC_008589.1 Thalassiosira pseudonana 141 127 0
NC_025314.1 Thalassiosira weissflogii 141 127 0
NC_007758.1 Theileria parva strain Muguga 44 27 12
NC_001799.1 Toxoplasma gondii RH 26 21 5
NC_026851.1 Trachydiscus minutus 137 124 8
NC_016731.1 Ulnaria acus 130 128 0
NC_011600.1 Vaucheria litorea 139 138 1
NC_026523.1 Vertebrata lanosa 192 191 1
  1. #Prot, number of plastid-encoded proteins in the species; #clust, number of clusters containing at least one from the species and one out of the species; and #sing, number of plastid-encoded proteins from the species not included in any cluster