Pipelines | Total number of centroids used to build the Mock Referencea | Total number of paired-end reads used for SNP callingb | Number of SNPs calledc | Avg. depthd | Hetero (%)e | Homo (%)f | Missing data (%)g | Time (hrs:mins)h |
---|---|---|---|---|---|---|---|---|
GBS-SNP-CROP-MR48 | 1,276,734 | 92,667,123 | 14,712 | 70.74 | 32.47 | 59.31 | 8.20 | 14:30 |
GBS-SNP-CROP-MR05 | 500,795 | 132,920,383 | 20,226 | 71.02 | 34.50 | 57.18 | 8.31 | 12:06 |
GBS-SNP-CROP-MR01 | 229,549 | 154,506,669 | 21,318 | 69.34 | 34.51 | 56.85 | 8.29 | 11:03 |