Table 1 Characteristics of the a priori graphs and LOMBARDE output networks
From: Deciphering transcriptional regulations coordinating the response to environmental changes
Network | Explained | No. of | No. of | No. of | |
|---|---|---|---|---|---|
co-expressions | vertices | arcs | arcs in \(\mathcal {V}\) | ||
TRN \(\mathcal {G}_{\mathcal {V}}\) built from \(\mathcal {V}\) | 3,990 | (6.5 %) | 823 | 1,652 | 1,652 |
E. coli ab initio \(\mathcal {G}_{\mathcal {A}}\) | 56,044 | (91.1 %) | 2,390 | 25,604 | 444 |
Lombarde output for \(\mathcal {G}_{\mathcal {A}}\) | 56,044 | (91.1 %) | 2,336 | 4,922 | 295 |
E. coli extended\(\mathcal {G}_{\mathcal {AV}}\) | 56,789 | (92.3 %) | 2,434 | 26,812 | 1,652 |
Lombarde output for \(\mathcal {G}_{\mathcal {AV}}\) | 56,789 | (92.3 %) | 2,370 | 4,374 | 1,520 |