Table 2 Benchmark of ClinQC with Sanger sequencing trace files. We used 1000 trace files in AB1 format. The read lengths were ranging between 400 and 1000 base pairs. We randomly sampled 1000 files in multiple test data sets ranging from 10 files to 1000 files. The execution time is measured in minutes
From: ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research
Number of trace file | Execution time (minutes) |
|---|---|
10 | 0.11 |
25 | 0.25 |
50 | 0.38 |
100 | 1.11 |
200 | 2.12 |
300 | 3.27 |
400 | 4.29 |
500 | 5.37 |
1000 | 11.01 |