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Table 1 Comparison between TINCD and state-of-the-art methods with respect to CYC2008

From: A two-layer integration framework for protein complex detection

Methods No. of complexes No. of covered proteins Acc FRAC
TINCD 1562 5846 0.776 0.813
EC-BNMF 457 2105 0.751 0.677
CMBI 618 1041 0.459 0.349
InteHC 684 3400 0.748 0.634
CFinder 245 2008 0.518 0.319
CMC 562 1651 0.643 0.655
COACH 746 1838 0.650 0.664
ClusterONE 342 1366 0.584 0.438
DPClus 651 2140 0.639 0.680
IPCA 816 1621 0.617 0.575
MCL 600 4101 0.644 0.536
MCODE 108 666 0.485 0.311
RNSC 541 2095 0.619 0.506
RRW 248 1174 0.571 0.511
SPICi 412 2113 0.607 0.502
BT 409 1286 0.728 0.591
C2S 1035 4500 0.761 0.664
CACHET 449 964 0.674 0.553
Hart 390 1307 0.720 0.600
Pu 400 1504 0.732 0.579