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Table 2 Correlations between RNA-Seq gene expression estimates and microarray intensities

From: Trimming of sequence reads alters RNA-Seq gene expression estimates

Data set

Untrimmed

Q10

Q20

Q30

Q40

Q40 L36

Rat

0.855

0.853

0.851

0.848

0.744

0.751

Yeast

0.891

0.891

0.889

0.887

0.863

0.785

  1. Values represent correlation coefficients between gene expression values determined by microarray data sets and RNA-Seq data sets that were trimmed with SolexaQA with quality scores as indicated, followed by mapping and modeling with TopHat2 and Cuffdiff2
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BMC Bioinformatics

ISSN: 1471-2105

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