Table 1 Numbers of non-redundant cross-linked peptides identified by xQuest, pLink, ProteinProspector, Kojak, and ECL, respectively. The database contains 34 proteins
From: ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database
Data set | xQuest | pLink | ProteinProspector | Kojak | ECL |
|---|---|---|---|---|---|
1 | 70 (56) | 5 (4) | 104 (69) | 102 (71) | 97 |
2 | 73 (41) | 28 (17) | 99 (45) | 120 (56) | 58 |
3 | 90 (62) | 28 (10) | 96 (64) | 139 (90) | 127 |
4 | 61 (47) | 20 (14) | 94 (68) | 110 (83) | 135 |