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Table 1 Numbers of non-redundant cross-linked peptides identified by xQuest, pLink, ProteinProspector, Kojak, and ECL, respectively. The database contains 34 proteins

From: ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

Data set xQuest pLink ProteinProspector Kojak ECL
1 70 (56) 5 (4) 104 (69) 102 (71) 97
2 73 (41) 28 (17) 99 (45) 120 (56) 58
3 90 (62) 28 (10) 96 (64) 139 (90) 127
4 61 (47) 20 (14) 94 (68) 110 (83) 135
  1. Values in the brackets are the numbers of overlapping cross-linked peptides identified by both ECL and the corresponding method