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Table 8 Experiment results of our three approaches: BEST1G, U3G, O2G

From: Protein-protein interaction extraction with feature selection by evaluating contribution levels of groups consisting of related features

Corpus

LLL

HPRD50

IEPA

AIMed

(%)

P

R

F

P

R

F

P

R

F

P

R

F

k-NN

71.6

79.8

74.4

71.9

62.4

65.9

68.4

66.6

67.2

52.1

35.9

42.3

BEST1G

74.7

82.2

76.5

72.5

72.6

71.6

67.7

71.3

69.2

50.8

40.9

45.1

U3G

74.6

80.7

75.9

72.5

72.6

71.6

68.3

71.7

69.8

49.5

40.5

44.4

O2G

74.7

82.2

76.5

73.0

74.3

72.6

68.1

71.3

69.5

50.2

39.8

44.3

  1. Precision (P), recall (R), F-score (F) results of our three approaches (BEST1G, U3G, O2G) evaluated by 10-fold document-level cross-validation on four corpora, LLL, HPRD50, IEPA, and AIMed, shown in the second, third, and fourth row. As a baseline, in the first row, we add results when only k-NN is applied, and feature selection using contribution levels of groups consisting of related features was not performed. Precision (P), recall (R), and F-score (F) values are shown by percentage (%). Bold typeface shows best results per corpus in terms of precision, recall, and F-score