Table 2 Average SP and TC scores on SABmark
From: PnpProbs: a better multiple sequence alignment tool by better handling of guide trees
ALL | Twilight Zone | Superfamily | Time | ||||
|---|---|---|---|---|---|---|---|
SP | TC | SP | TC | SP | TC | mm:ss | |
PnpProbs | 61.37 ∗ | 41.70 | 44.40 | 24.80 | 67.19 ∗ | 47.49 | 3:00 |
GLProbs | 61.42 | 41.36 ∗ | 44.35 ∗ | 24.30 ∗ | 67.27 | 47.21 ∗ | 3:20 |
MSAProbs | 60.27 | 40.02 | 42.97 | 22.88 | 66.20 | 45.90 | 1:58 |
Probalign | 59.53 | 38.63 | 42.42 | 22.64 | 65.39 | 44.11 | 1:01 |
CONTRAlign | 57.45 | 35.59 | 39.01 | 17.69 | 63.77 | 41.73 | 4:56 |
ProbCons | 59.69 | 39.17 | 42.81 | 22.78 | 65.47 | 44.79 | 1:12 |
MUSCLE | 54.51 | 33.47 | 34.69 | 16.96 | 61.29 | 39.13 | 0:46 |
MAFFT | 52.63 | 32.57 | 31.72 | 15.17 | 59.79 | 38.53 | 0:22 |
T-Coffee | 59.14 | 39.53 | 41.66 | 23.29 | 65.13 | 45.10 | 4:36 |
Clustal Ω | 55.02 | 35.47 | 35.55 | 18.10 | 61.69 | 41.42 | 0:18 |
ClustalW | 51.92 | 31.37 | 31.45 | 15.09 | 58.93 | 36.95 | 0:14 |
PicXAA | 59.37 | 39.11 | 41.05 | 21.51 | 65.65 | 45.14 | 3:29 |
DIALIGN | 47.09 | 27.11 | 27.85 | 12.73 | 53.69 | 32.05 | 1:03 |
Align-m | 46.19 | 31.07 | 25.72 | 16.28 | 53.21 | 36.14 | 5:32 |