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Table 2 Average SP and TC scores on SABmark

From: PnpProbs: a better multiple sequence alignment tool by better handling of guide trees

  ALL Twilight Zone Superfamily Time
  SP TC SP TC SP TC mm:ss
PnpProbs 61.37 41.70 44.40 24.80 67.19 47.49 3:00
GLProbs 61.42 41.36 44.35 24.30 67.27 47.21 3:20
MSAProbs 60.27 40.02 42.97 22.88 66.20 45.90 1:58
Probalign 59.53 38.63 42.42 22.64 65.39 44.11 1:01
CONTRAlign 57.45 35.59 39.01 17.69 63.77 41.73 4:56
ProbCons 59.69 39.17 42.81 22.78 65.47 44.79 1:12
MUSCLE 54.51 33.47 34.69 16.96 61.29 39.13 0:46
MAFFT 52.63 32.57 31.72 15.17 59.79 38.53 0:22
T-Coffee 59.14 39.53 41.66 23.29 65.13 45.10 4:36
Clustal Ω 55.02 35.47 35.55 18.10 61.69 41.42 0:18
ClustalW 51.92 31.37 31.45 15.09 58.93 36.95 0:14
PicXAA 59.37 39.11 41.05 21.51 65.65 45.14 3:29
DIALIGN 47.09 27.11 27.85 12.73 53.69 32.05 1:03
Align-m 46.19 31.07 25.72 16.28 53.21 36.14 5:32
  1. The best and second best results in each column are marked in bold and with *, respectively