Table 1 Examples of the variation of the transition probabilities at the sequence identity of 80 % between Markovian (P) and non-Markovian (\(\widetilde {P}\)) dynamics
From: Non-Markovian effects on protein sequence evolution due to site dependent substitution rates
Initial state | Final state | P(t) | \(\widetilde {P}(\tilde {t})\) | \(P(t)/\widetilde {P}(\tilde {t})\) |
|---|---|---|---|---|
ATC | TGG | 5.21·10−8 | 8.23·10−6 | 0.006 |
TTC | ATG | 3.39·10−5 | 3.09·10−4 | 0.110 |
GTC | GTT | 0.1507 | 0.0951 | 1.58 |
Ile | Val | 0.104 | 0.076 | 1.4 |
Arg | Lys | 0.064 | 0.049 | 1.3 |
Gly | Ile | 0.0006 | 0.0022 | 0.3 |