Table 3 Iterative inference of DREAM4 100-gene gold-standard GRNs with multiplexing assay using TRaCE and using TRaCE+ (w cut  = 0 and w cut  = 0.3): Number of iterations and maximum number of genes in KO experiments
Net | TRaCE | TRaCE+ | TRaCE+(w) | |||
|---|---|---|---|---|---|---|
Iterations | Max KO | Iterations | Max KO | Iterations | Max KO | |
1 | 7 | 3 | 5 | 3 | 6 | 4 |
2 | 5 | 2 | 4 | 2 | 4 | 2 |
3 | 10 | 3 | 11 | 3 | 12 | 3 |
4 | 14 | 3 | 15 | 3 | 14 | 3 |
5 | 11 | 3 | 12 | 4 | 13 | 4 |