Table 4 Comparison of Kraken results to SMART using the Genbank library and BLAST for Conjunctival Sample 1
Kraken Genus | Kraken reads | SMART | BLAST | ||||||
|---|---|---|---|---|---|---|---|---|---|
Mammalian | Same Genus | Other Genus | Unknown | Mammalian | Same Genus | Other Genus | Unknown | ||
Top 10 classified | |||||||||
Altermonas | 1,545 | 1,249 | 0 | 283 | 13 | 1,227 | 45 | 238 | 35 |
Propionibacterium | 323 | 90 | 232 | 0 | 1 | 8 | 314 | 0 | 1 |
Mycoplasma | 100 | 100 | 0 | 0 | 0 | 77 | 0 | 0 | 23 |
Pseudomonas | 93 | 5 | 86 | 0 | 2 | 6 | 85 | 0 | 2 |
Pandoravirus dulcis | 88 | 88 | 0 | 0 | 0 | 44 | 0 | 0 | 44 |
Pandoravirus salinus | 46 | 46 | 0 | 0 | 0 | 11 | 0 | 0 | 35 |
Staphylococcus | 46 | 4 | 42 | 0 | 0 | 0 | 46 | 0 | 0 |
Human Endogenous Retrovirus K113 | 31 | 30 | 0 | 0 | 1 | 30 | 0 | 0 | 1 |
Delftia | 30 | 7 | 23 | 0 | 0 | 2 | 28 | 0 | 0 |
Corynebacterium | 28 | 3 | 24 | 0 | 1 | 0 | 28 | 0 | 0 |