Table 5 Comparison of CLARK results to SMART using the Genbank library and BLAST for Conjunctival Sample 1
CLARK Genus | CLARK reads | SMART | BLAST | ||||||
|---|---|---|---|---|---|---|---|---|---|
Mammalian | Same Genus | Other Genus | Unknown | Mammalian | Same Genus | Other Genus | Unknown | ||
Top 10 classified | |||||||||
Alteromonas | 1,722 | 1,400 | 300 | 0 | 22 | 1,283 | 201 | 36 | 202 |
Mycoplasma | 637 | 637 | 0 | 0 | 0 | 386 | 2 | 0 | 249 |
Propionibacterium | 366 | 94 | 1 | 268 | 3 | 10 | 0 | 353 | 3 |
Pandoravirus dulcis | 337 | 337 | 0 | 0 | 0 | 82 | 0 | 0 | 255 |
Pandoravirus salinus | 275 | 273 | 0 | 0 | 2 | 89 | 0 | 0 | 186 |
Bracovirus | 228 | 226 | 0 | 0 | 2 | 117 | 0 | 0 | 111 |
Ichnovirus | 163 | 162 | 0 | 0 | 1 | 34 | 0 | 0 | 129 |
Yersinia | 162 | 161 | 0 | 0 | 1 | 15 | 0 | 0 | 147 |
Pseudomonas | 128 | 8 | 0 | 117 | 3 | 5 | 0 | 103 | 20 |
Hepacivirus | 128 | 128 | 0 | 0 | 0 | 84 | 0 | 0 | 44 |