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Table 5 Comparison of performance for selecting paired-end sequences (paired)

From: BAMQL: a query language for extracting reads from BAM files

  System User Wall Code
Tool time (s) time (s) time (s) (bytes)
BAMQL 22.54 1271.20 1364.64 45
C 29.31 1277.55 1377.29 706
Perl 28.54 1383.65 1474.48 319
Python 29.48 1314.25 1413.04 262
SAMtools 28.26 1271.97 1382.81 46
Sambamba 35.11 1855.81 583.02 53
  1. Best performer is highlighted in bold