Table 5 Comparison of performance for selecting paired-end sequences (paired)
From: BAMQL: a query language for extracting reads from BAM files
| Â | System | User | Wall | Code |
|---|---|---|---|---|
Tool | time (s) | time (s) | time (s) | (bytes) |
BAMQL | 22.54 | 1271.20 | 1364.64 | 45 |
C | 29.31 | 1277.55 | 1377.29 | 706 |
Perl | 28.54 | 1383.65 | 1474.48 | 319 |
Python | 29.48 | 1314.25 | 1413.04 | 262 |
SAMtools | 28.26 | 1271.97 | 1382.81 | 46 |
Sambamba | 35.11 | 1855.81 | 583.02 | 53 |