From: Protein complex detection based on partially shared multi-view clustering
Methods | # complexes | # proteins | Reference sets | |||||
---|---|---|---|---|---|---|---|---|
CYC2008 | SGD | |||||||
Evaluation metrics | ||||||||
FRAC | Recall | Acc | FRAC | Recall | Acc | |||
PSMVC | 1534 | 5508 | 0.712 | 0.706 | 0.814 | 0.607 | 0.598 | 0.699 |
EC-BNMF [28] | 400 | 1936 | 0.577 | 0.558 | 0.763 | 0.530 | 0.497 | 0.681 |
InteHC [3] | 366 | 2763 | 0.571 | 0.527 | 0.765 | 0.530 | 0.466 | 0.697 |
ClusterONE [27] | 362 | 1394 | 0.337 | 0.353 | 0.559 | 0.333 | 0.333 | 0.512 |
CMC [25] | 566 | 1391 | 0.442 | 0.468 | 0.523 | 0.388 | 0.420 | 0.475 |
Linkcomm [49] | 1531 | 2640 | 0.399 | 0.492 | 0.549 | 0.399 | 0.455 | 0.516 |
MCODE [47] | 83 | 952 | 0.166 | 0.139 | 0.435 | 0.109 | 0.094 | 0.388 |
MINE [48] | 231 | 1247 | 0.337 | 0.312 | 0.526 | 0.295 | 0.275 | 0.497 |
MF-PINCoC [50] | 1099 | 2838 | 0.399 | 0.368 | 0.563 | 0.355 | 0.330 | 0.520 |
PINCoC [51] | 1101 | 4457 | 0.423 | 0.394 | 0.573 | 0.404 | 0.366 | 0.535 |
RANCoC [52] | 1069 | 2797 | 0.436 | 0.406 | 0.596 | 0.410 | 0.379 | 0.542 |
SPICi [26] | 420 | 2041 | 0.350 | 0.329 | 0.563 | 0.339 | 0.313 | 0.510 |
BT [53] | 409 | 1286 | 0.509 | 0.463 | 0.749 | 0.508 | 0.461 | 0.678 |
C2S [31] | 1035 | 4499 | 0.571 | 0.527 | 0.781 | 0.519 | 0.463 | 0.692 |
CACHET [29] | 449 | 963 | 0.472 | 0.665 | 0.697 | 0.448 | 0.626 | 0.632 |
Hart [54] | 390 | 1307 | 0.509 | 0.467 | 0.746 | 0.481 | 0.421 | 0.665 |
Pu [55] | 400 | 1504 | 0.479 | 0.418 | 0.729 | 0.497 | 0.429 | 0.669 |