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Table 4 Columns give: name of the PPI and complex data set, number of complexes of size ≥3, number of complexes with at least one center at distance 1 (r=1) for a fraction of at least 0.9 of its size and at least 0.5 of its size. Similar data for a center at distance 2, (r=2)

From: Protein complex prediction for large protein protein interaction networks with the Core&Peel method

Name

# CX

r1 >0.9

r1 >0.5

r2 >0.9

r2 >0.5

DIP-CYC2008

226

131 (55 %)

197 (83 %)

163

212

BioGrid-CYC2008

236

216 (91 %)

234 (99 %)

234

236

String-CYC2008

236

235 (99 %)

236 (100 %)

236

236

BioGrid-CORUM

1257

891 (70 %)

1162 (92 %)

1176

1246

String-CORUM

1188

923 (77 %)

1139 (95 %)

1085

1188