Skip to main content

Table 1 Secondary structure assessment of designed sequences. The predicted secondary structure accuracies of designed sequences by GAPSSIF, EvoDesign and Evolver on five proteins are estimated. PSS-Pred, PSI-Pred and Reprof are used as secondary structure prediction algorithms

From: Evaluating the accuracy of protein design using native secondary sub-structures

PDB ID_Chain GAPSSIF EvoDesign Evolver
Reprof% PSS% PSI% Reprof% PSS% PSI% Reprof% PSS%
B Ave B Ave B Ave B Ave B Ave B Ave B Ave B Ave
1ZZK_A 100 100 87.5 80.75 87.5 81.37 82 66.5 83 70.55 83 66.3 88.75 88.33 91.25 87.91
1XTE_A 100 99.74 92.24 86.81 93.96 85.94 69 61.9 85 74.7 81 69.6 88.79 89.22 90.51 89.65
2VOU_A 100 99.93 92.46 89.45 92.46 89.17 78 58.8 84 70.1 84 70.1 90.41 55.58 86.30 83.78
3I4O_A 100 100 91.17 87.20 97.05 89.26 73 59.1 82 60.6 75 64 75 70.58 77.94 68.62
1R26_A 100 100 96.15 91.24 92.30 87.49 84 68.2 95 77.6 95 76.5 91.34 91.02 93.26 92.30