Skip to main content

Table 3 Results of simulation S4

From: NEAT: an efficient network enrichment analysis test

Test

p KS

R 1

R 5

Sensitivity

Specificity

AUC

NEAT

0.399

1.33

1.14

69 %

94 %

0.920

NEA

0.001

0

0.87

68 %

96 %

0.918

LP

0

2.13

1.51

68 %

92 %

0.908

LA

0.255

1.60

1.17

60 %

94 %

0.897

LA+S

0.409

1.87

1.17

63 %

94 %

0.913

NP

0.037

1.24

1.28

58 %

94 %

0.884

  1. The best results for each indicator are in bold. p KS denotes the p-value of the Kolmogorov-Smirnov test for uniform distribution, AUC is an abbreviation for “area under the ROC curve”. The distribution of p-values under H 0 is evidently not uniform for NEA and LP. NEAT shows the highest values of sensitivity and AUC, and its specificity is close to the target value (95 %)