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Table 7 Network enrichment analysis of the induced ESR gene set (GO Slim sets)

From: NEAT: an efficient network enrichment analysis test

  GO Slim BP gene set n AB μ 0 log 10 (p-value)
1 Carbohydrate metabolic process 1296 671.2 –110.9
2 Oligosaccharide metabolic process 442 165.3 –77.3
3 Carbohydrate transport 202 65.8 –45.0
4 Lipid metabolic process 693 484.4 –19.9
5 Peroxisome organization 181 124.8 –6.0
6 Lipid transport 120 79.7 –4.9
7 Generation of precursor metabolites and energy 585 294.8 –54.0
8 Cellular respiration 210 118.4 –14.5
9 Proteolysis involved in cellular protein catabolic process 639 488.5 –10.9
10 Protein folding 476 296.9 –22.7
11 Response to oxidative stress 813 242.2 –202.7
12 Response to chemical stimulus 1489 885.1 –83.4
13 Response to starvation 459 331.4 –11.2
14 Transmembrane transport 910 644.4 –24.2
15 Endocytosis 395 245.5 –19.3
16 Protein targeting 628 478.8 –10.9
17 Ion transport 464 380.2 –4.8
18 Amino acid transport 137 109.4 –2.1
19 Cofactor metabolic process 523 219.0 –73.7
20 Nucleobase-containing small molecule metabolic process 722 404.5 –49.2
21 Membrane invagination 278 120.6 –37.0
22 Vacuole organization 335 200.2 –18.9
23 Protein maturation 49 27.7 –3.9
24 Cell morphogenesis 113 79.4 –3.6
25 Sporulation 352 306.4 –2.1
  1. The table lists the 25 Go Slim BP gene sets which the set of induced ESR genes is found to be over-enriched with at 1 % significance level