Fig. 3

Interactive functioning of mmap.pl. a default or main “Run Status” screen presenting the currently running codeml tasks; by pressing “2”, shows the “Task Status” screen, showing b the tasks that will be running next (first ten) and c the tasks currently finished (last ten) (press "1" to go back to "Run Status" screen); d when interrupting the execution of mmap.pl (by typing “Ctrl-c” or “Ctrl-\”), beyond the choice of quitting, the user has also the choice to proceed to the built-in process manager here presented, allowing the termination of specific tasks. In this case, it is possible to terminate a group of tasks by typing “G:MMAPID” or a single task “P:PROCID”. The identifiers for MMAPID and PROCID are shown in the table, in the respective columns