CryGetter: a tool to automate retrieval and analysis of Cry protein data

BMC Bioinformatics

Table 1 Cry proteins models available in PDB and PMDB and others just described in literature

Protein	Affected order(s)	Model Id ^a	Reference(s)	Obs.
Cry1Aa1	Diptera,	1CIY	[51, 52]
	Lepdoptera and
	Gastropoda
Cry1Ab16	Diptera,	unavailable	[53]	There isn’t a deposited model
	Lepdoptera and
	Gastropoda
Cry1Ab19	Diptera,	unavailable	[54]	There isn’t a deposited model
	Lepdoptera and
	Gastropoda
Cry1Ac1	Diptera,	4ARX	Not yet published
	Lepdoptera and	4ARY	Not yet published
	Gastropoda	4W8J	[55]
Cry1Ld	Lepdoptera	unavailable	[56]	There isn’t a deposited model
Cry2Aa1	Diptera,	1I5P	[57]
	Hemiptera and
	Lepdoptera
Cry3A	Coleoptera,	1DLC	[58]
	Hemiptera and
	Hymenoptera
Cry3Aa1	Coleoptera,	4QX0	[59]
	Hemiptera and	4QX1
	Hymenoptera	4QX2
Cry3Bb1	Coleoptera	1JI6	[60]
Cry4Aa1	Diptera	2C9K	[61, 62]
Cry4Ba1	Diptera	1W99	[63]
		4MOA	Not yet published
Cry5Aa1	Hymenoptera and	PM0074964	[64]
	Rhabditida
Cry5B	Rhabditida	4D8M	[65]
Cry5Ba1	Rhabditida	PM0075036	[66]
Cry6Aa	Rhabditida	5J66	Not yet published	Pore formation
Cry23Aa1	Coleoptera	4RHZ	Not yet published	Binary protein complex
Cry37Aa1
Cry8Ea1	Coleoptera	3EB7	[67]
Cry11Bb1	Diptera	unavailable	[68]	There isn’t a deposited model
Cry30Ca2	Diptera	unavailable	[69]	There isn’t a deposited model
Cry34Ab1	Coleoptera	4JOX	[70]
Cry35Ab1	Coleoptera	4JP0	[70]
Cry51Aa1	Coleoptera and	4PKM	[71]
	Hemiptera

^aThe model ids with 4 characters are from PDB while the model ids with 9 characters are from PMDB

ISSN: 1471-2105