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Table 6 Selected genes from lasso and each bag type (B1, B2, B3) based on biological reasons and PMSE and averaged PMSE over 100 bootstrap samples (B-PMSE) in the test data

From: Tilting the lasso by knowledge-based post-processing

  Lasso Bag type B1 Bag type B2 Bag type B3
  AK3L1 ADAMTS2 ADAMTS2 RARA
  CCHCR1 CCHCR1 CCHCR1 CCHCR1
  CRYGS PPARA PPARA ESR1
  CSRNP3 RUNX2 RUNX2 CSRNP3
  FAF1 FAF1 FAF1 BMPR2
  FKBP14 SPTBN1 SPTBN1 VDR
  FLRT2 PDGFA PDGFA FLRT2
  KDM4A SLC44A1 KDM4A7 KDM4A
  LOC642852 OSTM1 OSTM1 LOC642852
  MAPK8 BMP7 BMP7 WHAMML1 /// WHAMML2
  NF1 NF1 NF1 CSNK1G3
  PIAS4 ESR1 ESR1 PIAS4
  PLIN5 PLIN5 HGF RHO
  PPIL2 BMP5 BMP5 SRGAP3
  RNF31 RNF31 RNF31 GLP1R G
  SRR SMAD3 SRR SRR
  TRPS1 SFRP1 SFRP1 TRPS1
  ZMAT3 ZMAT3 ZMAT3 ZMAT3
PMSE 1.900 1.009 1.086 5.810
B-PMSE 1.871 1.001 1.024 5.053
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