Table 1 Each topic is composed a set of genes. Genes are ranked according to the probability of topic-gene matrix. The table shows the top 10 genes at the time point of 4 days
From: Application of dynamic topic models to toxicogenomics data
Topic1 | Topic2 | Topic3 | Topic4 | Topic5 |
Acot1_up | Lcn2_up | Dhrs7_down | Trib3_up | Acot1_up |
Vnn1_up | S100a8_up | Akr1b7_up | Fgf21_up | Fabp3_up |
Aig1_up | S100a9_up | Slc22a8_down | Ddit3_up | Cpt1b_up |
Ehhadh_up | LOC360228_up | Rbp7_up | Pycr1_up | Hdc_up |
Eci1_up | Spink3_up | A1bg_up | Nupr1_up | Vnn1_up |
Ech1_up | RGD1307603_down | Car3_down | Acot1_up | Aig1_up |
Cyp4a1_up | Lbp_up | Ust5r_down | Phgdh_up | Acot3_up |
Acaa1a_up | A2m_up | Rdh2_down | Gsta5_up | Aqp7_up |
Acot2_up | Stac3_down | Gsta5_up | Asns_up | RGD1305928_up |
Aldh1a1_up | Cxcl1_up | Cyp3a9_up | Akr7a3_up | Stac3_down |
Topic6 | Topic7 | Topic8 | Topic9 | Topic10 |
Cyp2c11_down | Stac3_down | Car3_down | Gstm3_up | Gsta5_up |
Car3_down | Aldh1a1_up | Dhrs7_down | Stac3_down | Ces2c_up |
Cyp2a2_down | Ces2c_up | Cyp2c11_down | Lcn2_up | Aldh1a1_up |
Ust5r_down | Gsta5_up | Stac3_down | Car3_down | Aldh1a7_up |
Hao2_down | Akr7a3_up | Ust5r_down | Zfp354a_down | Akr7a3_up |
Cyp3a2_down | Scd1_down | Kynu_down | Sds_down | Stac3_down |
Cyp2d3_down | Mgmt_up | Sult1c3_down | Lbp_up | Dhrs7_down |
Slc10a1_down | Oat_down | Sult1e1_down | Gpnmb_up | Abcc3_up |
Sult1e1_down | Cdkn1a_up | Aldh1a7_up | Epcam_up | Ugt2b1_up |
Lipc_down | Ccng1_up | Slc22a8_down | LOC360228_up | Cyp1a1_up |
Topic11 | Topic12 | Topic13 | Topic14 | Topic15 |
Gstp1_up | Stac3_down | Oat_down | Stac3_down | RGD1584021_up |
Stac3_down | Oat_down | Gstm3_up | Cyp1a1_up | Isg15_up |
Akr7a3_up | Dhrs7_down | Stac3_down | Scd1_down | Gstm3_up |
Oat_down | Lcn2_up | Pln_up | Kif20a_down | Fads1_down |
Ccrn4l_up | Gstm3_up | Aldh1a1_up | Ccnb1_down | Ca2_up |
Pycr1_up | Cyp1a2_down | Rbp7_up | Ect2_down | Fads2_down |
Inmt_down | Fam25a_up | Ces2c_up | Ube2c_down | Slc6a13_down |
Tmed3_up | Sds_down | Ccng1_up | Nusap1_down | Rsad2_up |
Fkbp11_up | Anxa2_up | Pbk_up | Cdk1_down | LOC100361444_up |
Cdk1_up | Aldh1a1_up | Inmt_down | Prc1_down | Ftcd_down |
Topic16 | Topic17 | Topic18 | Topic19 | Topic20 |
Car3_down | A2m_up | Akr1b7_up | Scd1_down | Pglyrp1_up |
Gstm3_up | Lcn2_up | Isyna1_up | Zfp354a_up | Cyp1a2_down |
Stac3_down | Stac3_down | Stac3_down | Gsta5_up | Npy_up |
Aldh1a1_up | Serpina7_up | Aldh1a1_up | Dhrs7_down | Pln_up |
Trib3_up | Cxcl1_up | Spink3_down | Ube2c_down | Ces2c_up |
Aldh1a7_up | Lbp_up | Scd1_down | RGD1309362_down | Rbp7_up |
Gsta5_up | LOC360228_up | A2m_down | Aldh1a7_up | Lcn2_up |
Cyp4b1_up | Dhrs7_down | Cyp17a1_up | Aldh1a1_up | Tspan8_up |
Spink1_down | Fgl1_up | Aldh1a7_up | Hamp_up | LOC299282_down |
Hal_down | S100a9_up | Cyp2c11_down | Gstt3_up | S100a10_up |