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Table 1 Parameter specifications and number of tissues for all dictionaries

From: Tissue enrichment analysis for C. elegans genomics

Annotation cutoff Similarity threshold Method No. of terms in dictionary
25 0.9 any 460
25 0.9 avg 461
25 0.95 any 466
25 0.95 avg 468
25 1 any 476
25 1 avg 476
33 0.9 any 261
33 0.9 avg 255
33 0.95 any 261
33 0.95 avg 262
33 1 any 247
33 1 avg 247
50 0.9 any 83
50 0.9 avg 77
50 0.95 any 82
50 0.95 avg 81
50 1 any 70
50 1 avg 70
100 0.9 any 45
100 0.9 avg 35
100 0.95 any 42
100 0.95 avg 36
100 1 any 21
100 1 avg 21
  1. The ‘Method’ column refers to the trimming criterion for the similarity metric. We used two such criteria, ‘any’ and ‘avg’.‘any’: For a given sister set, if any sister had a similarity exceeding the corresponding threshold, all sisters were removed from the final dictionary. ‘avg’: For a given sister set, if the average similarity across all the sisters in the set was greater than the corresponding threshold, all sisters were removed from the final dictionary