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Table 1 Time and memory consumption for peak-calling the six replicates of H3K4me3 in H1

From: Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering

Method

100nt, 400nt

50nt, 200nt

 

Time (mm:ss)

Max mem (GB)

Time (h:mm:ss)

Max mem (GB)

Sierra platinum

23:16

20.0

48:46

24

PePr

a59:15

a16.0

a4:12:46

a21.24

MACS-SA

33:23

1.0

33.41

0.96

MACS-CR

30:47

3.4

30:15

3.26

  1. All results were obtained on the same machine (see Additional file 1 for hardware specification) and with the same input files using a cut-off value of p=10−5
  2. aElapsed time or maximal memory used until crash
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BMC Bioinformatics

ISSN: 1471-2105

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