Table 1 FMAP performs pathway analysis of a Crohn’s disease study
From: FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
Pathway | KO Count | Pathway Coverage | P-value |
|---|---|---|---|
Flagellar assembly | 23 | 0.622 | 2.977 × 10−25 |
Bacterial chemotaxis | 13 | 0.500 | 4.331 × 10−13 |
Synthesis and degradation of ketone bodies | 2 | 0.250 | 2.798 × 10−2 |
Pentose and glucuronate interconversions | 8 | 0.131 | 9.820 × 10−4 |
Glutathione metabolism | 5 | 0.125 | 1.077 × 10−2 |
Porphyrin and chlorophyll metabolism | 10 | 0.094 | 3.110 × 10−3 |
Butanoate metabolism | 7 | 0.085 | 2.087 × 10−2 |
Glycine, serine and threonine metabolism | 7 | 0.075 | 3.810 × 10−2 |
Glyoxylate and dicarboxylate metabolism | 7 | 0.074 | 4.201 × 10−2 |
Two-component system | 23 | 0.054 | 1.933 × 10−2 |