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Table 7 Time in seconds to measure gene functional similarity of five organisms

From: SGFSC: speeding the gene functional similarity calculation based on hash tables

Organism Type # of annotated genes # of average annotations # of gene pairs Time Resnik Time
Jiang
Time
Lin
Time
Wang
Time
Pekar
Time
simUI
Time
simGIC
Human BP 39337 4.35 7.74 × 108 36702 36487 36366 36427 36972 19088 19762
  CC 35975 2.56 6.47 × 108 5843 5815 5814 5810 5869 4921 5815
  MF 38404 2.32 7.37 × 108 323 326 327 321 326 4519 4828
Arabidopsis BP 25532 3.24 3.26 × 108 6945 6957 5948 6956 6953 5238 5590
  CC 17683 2.00 1.56 × 108 812 808 841 816 816 962 989
  MF 20305 1.92 2.06 × 108 632 616 619 622 628 1048 1091
Yeast BP 5906 3.20 1.74 × 107 578 580 586 583 579 353 383
  CC 5660 2.22 1.60 × 107 143 146 145 146 144 432 142
  MF 5902 2.30 1.74 × 107 66 64 66 65 64 94 100
Rat BP 23319 4.62 2.65 × 108 13650 13690 13641 13714 13705 7219 7954
  CC 22217 2.60 2.47 × 108 2319 2314 2299 2411 2319 1911 2083
  MF 23065 2.49 2.66 × 108 1334 1315 1351 1339 1330 1750 1874
Oryza BP 1909 1.44 1.82 × 106 8 8 7 8 8 13 13
  CC 39995 1.06 8.00 × 108 1262 1343 1307 1258 1254 2976 3115
  MF 2041 1.60 2.08 × 106 5 5 5 4 5 9 10
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