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Table 6 Run time of four programs on the three data

From: TRIg: a robust alignment pipeline for non-regular T-cell receptor and immunoglobulin sequences

Run time

Decombinator

IgBLAST

IMGT

TRIg

Our data

0 m 8 s

4 m 43 s

84 m

0 m 15 s

SRR1544031

11 m 41 s

653 m 32 s

N.A.a

42 m 10 s

SRR9346(68-79;86-91)

N.A.

135 m 01 s

155 m

25 m 17 s

  1. IMGT jobs were done on the webserver. The rest tools were run using only one processor (800 MHz). aNot available because the data was split into 11 files and the total run time did not reflect the true run time
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BMC Bioinformatics

ISSN: 1471-2105

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