libFLASM: a software library for fixed-length approximate string matching

BMC Bioinformatics

Table 3 Single motif extraction from real datasets

Dataset	Parameters	Motif	Quorum (%)
RNA	<350,110>	RNA polymerase	100
		Rpb2, domain 6
Polymerase	<60,28>	RNA polymerase	100
		Rpb2, domain 4
	<40,12>	RNA polymerase	100
		Rpb2, domain 5
	<90,30>	RNA polymerase	100
		Rpb2, domain 7
Viruses	<350,150>	Viral methyltransferase	100
	<130,50>	Cucumber mosaic	100
		virus 1a protein
	<70,48>	Cucumber mosaic virus 1a	100
		protein C terminal
	<250,130>	Viral (Superfamily 1) RNA	100
		helicase
Hypothetical	<130,45>	Type III restriction enzyme,	100
		res subunit
Proteins	<60,30>	Helicase conserved	100
		C-terminal domain

ISSN: 1471-2105