BMC Bioinformatics

Table 3 Running time of different network inference programs

From: CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data

Methods	CMIP^a	CMIP^b	MI	ARACNE	CLR	GENIE3	Inferelator	TIGRESS
Multi-threads	Yes	Yes	No	No	No	No	Yes	No
Time (seconds)	7	4	8	353	68	4715	2728	13089

^aGPU version program, ^b CPU version program

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ISSN: 1471-2105

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