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Table 1 Evaluation using seeds with different length

From: A fast read alignment method based on seed-and-vote for next generation sequencing

rl 125 bp 150 bp
sl Time(s) Conf(%) Err(%) Time(s) Conf(%) Err(%)
32 bp 146 95.4 0.081 174 96.3 0.048
31 bp     176 96.2 0.035
30 bp 152 95.4 0.041    
23 bp 174 95.5 0.062 213 96.2 0.040
16 bp 218 95.0 0.100 269 96.0 0.072
  1. rl represents read length, sl represents seed length. All the experiments run on a single core of Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz.The bold texts represent the best performance on different read length