Table 1 Evaluation using seeds with different length
From: A fast read alignment method based on seed-and-vote for next generation sequencing
rl | 125 bp | 150 bp | ||||
|---|---|---|---|---|---|---|
sl | Time(s) | Conf(%) | Err(%) | Time(s) | Conf(%) | Err(%) |
32 bp | 146 | 95.4 | 0.081 | 174 | 96.3 | 0.048 |
31 bp | 176 | 96.2 | 0.035 | |||
30 bp | 152 | 95.4 | 0.041 | |||
23 bp | 174 | 95.5 | 0.062 | 213 | 96.2 | 0.040 |
16 bp | 218 | 95.0 | 0.100 | 269 | 96.0 | 0.072 |