DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations

BMC Bioinformatics

Table 3 Sample and mutation statistics of the TCGA-DeepGene dataset on 12 cancer types

Cancer name	Sample number	Missense mutation	Nonsense mutation	Nonstop mutation	RNA	Silent	Splice_Site	Translation start site	Total mutation
ACC	91	6741	501	15	368	2534	344	42	10,545
BLCA	130	24,067	2142	46	0	9662	528	55	36,500
BRCA	992	55,063	4841	133	3998	17,901	1424	0	83,360
CESC	194	26,606	2716	84	5595	9765	527	0	45,293
HNSC	279	31,416	2545	44	0	12,149	776	0	46,930
KIRP	171	8910	499	17	394	3411	524	0	13,755
LGG	284	5341	378	7	102	2074	294	0	8196
LUAD	230	44,800	3477	46	0	15,594	1377	99	65,393
PAAD	146	21,067	1496	19	859	7936	1005	111	32,493
PRAD	261	9628	563	15	652	3750	513	55	15,176
STAD	288	82,265	4200	92	48	33,344	1868	227	122,044
UCS	56	3070	187	2	234	1114	171	0	4778
Total	3122	318,974	23,545	520	12,250	119,234	9351	589	484,463

ISSN: 1471-2105