Table 3 Riched GO BP terms for genes with CP2to CP4 at promoters (details in Additional file 2: Table S2, Additional file 3: Tables S3, Additional file 4: Tables S4)

 Cell cycle

2.87E-36

regulation of cellular protein metabolic process

1.07E-40

 Mitotic cell cycle

1.04E-34

negative regulation of macromolecule metabolic process

1.62E-37

 Single-organism organelle organization

1.37E-29

cell cycle

2.17E-33

 tRNA metabolic process

2.71E-11

protein modification by small protein conjugation or removal

1.15E-14

 ncRNA metabolic process

3.64E-09

protein modification by small protein conjugation

2.62E-13

 tRNA processing

6.71E-09

ncRNA metabolic process

5.48E-13

 Protein modification by small protein conjugation or removal

3.57E-08

cellular respiration

9.00E-13

 ncRNA processing

1.07E-07

tRNA metabolic process

1.17E-12

 RNA processing

5.30E-09

RNA processing

5.51E-15

 tRNA metabolic process

4.06E-08

ncRNA metabolic process

1.40E-12

 DNA metabolic process

1.44E-06

DNA metabolic process

3.64E-11

 tRNA processing

5.01E-06

ncRNA processing

4.52E-11

 Cellular response to DNA damage stimulus

5.93E-06

DNA repair

1.04E-09

 ncRNA metabolic process

6.76E-06

cellular response to DNA damage stimulus

1.41E-09

 ncRNA processing

7.45E-06

RNA modification

6.34E-09