Method | Window size | 5p arm | 3p arm | ||||||
---|---|---|---|---|---|---|---|---|---|
Sn | Sp | Ac | MCC | Sn | Sp | Ac | MCC | ||
PHDCleav (sequence) | 8 | 0.602 | 0.503 | 0.552 | 0.105 | 0.662 | 0.625 | 0.644 | 0.287 |
10 | 0.541 | 0.573 | 0.557 | 0.115 | 0.661 | 0.642 | 0.652 | 0.303 | |
12 | 0.560 | 0.555 | 0.557 | 0.115 | 0.660 | 0.656 | 0.658 | 0.316 | |
14 | 0.539 | 0.572 | 0.555 | 0.111 | 0.654 | 0.702 | 0.678 | 0.356 | |
PHDCleav (structure) | 8 | 0.753 | 0.814 | 0.784 | 0.568 | 0.670 | 0.661 | 0.665 | 0.330 |
10 | 0.784 | 0.827 | 0.806 | 0.612 | 0.702 | 0.719 | 0.710 | 0.421 | |
12 | 0.790 | 0.842 | 0.816 | 0.633 | 0.739 | 0.764 | 0.752 | 0.503 | |
14 | 0.799 | 0.857 | 0.828 | 0.657 | 0.779 | 0.783 | 0.781 | 0.562 | |
Extended PHDCleav | 8 | 0.750 | 0.798 | 0.774 | 0.548 | 0.652 | 0.716 | 0.684 | 0.369 |
10 | 0.779 | 0.827 | 0.803 | 0.607 | 0.674 | 0.783 | 0.729 | 0.460 | |
12 | 0.809 | 0.845 | 0.827 | 0.654 | 0.714 | 0.790 | 0.752 | 0.506 | |
14 | 0.813 | 0.868 | 0.840 | 0.682 | 0.781 | 0.801 | 0.791 | 0.582 | |
LBSizeCleav (k=1) | 8 | 0.668 | 0.924 | 0.796 | 0.612 | 0.630 | 0.684 | 0.657 | 0.315 |
10 | 0.709 | 0.947 | 0.828 | 0.675 | 0.651 | 0.776 | 0.713 | 0.430 | |
12 | 0.774 | 0.945 | 0.859 | 0.730 | 0.686 | 0.847 | 0.766 | 0.540 | |
14 | 0.808 | 0.933 | 0.871 | 0.747 | 0.758 | 0.874 | 0.816 | 0.637 | |
LBSizeCleav (k=2) | 8 | 0.662 | 0.954 | 0.808 | 0.645 | 0.626 | 0.723 | 0.674 | 0.351 |
10 | 0.725 | 0.946 | 0.835 | 0.688 | 0.642 | 0.806 | 0.724 | 0.455 | |
12 | 0.784 | 0.938 | 0.861 | 0.731 | 0.665 | 0.882 | 0.773 | 0.560 | |
14 | 0.820 | 0.925 | 0.872 | 0.749 | 0.734 | 0.916 | 0.825 | 0.661 | |
LBSizeCleav (k=3) | 8 | 0.692 | 0.949 | 0.821 | 0.664 | 0.619 | 0.735 | 0.677 | 0.356 |
10 | 0.752 | 0.941 | 0.846 | 0.706 | 0.618 | 0.822 | 0.720 | 0.450 | |
12 | 0.803 | 0.932 | 0.867 | 0.741 | 0.635 | 0.914 | 0.774 | 0.571 | |
14 | 0.825 | 0.912 | 0.869 | 0.740 | 0.719 | 0.942 | 0.830 | 0.678 | |
LBSizeCleav (k=4) | 8 | 0.695 | 0.949 | 0.822 | 0.667 | 0.614 | 0.736 | 0.675 | 0.353 |
10 | 0.767 | 0.938 | 0.853 | 0.716 | 0.621 | 0.835 | 0.728 | 0.467 | |
12 | 0.815 | 0.927 | 0.871 | 0.747 | 0.639 | 0.912 | 0.776 | 0.573 | |
14 | 0.835 | 0.909 | 0.872 | 0.746 | 0.723 | 0.924 | 0.823 | 0.660 | |
LBSizeCleav (k=5) | 8 | 0.700 | 0.947 | 0.824 | 0.668 | 0.594 | 0.771 | 0.682 | 0.371 |
10 | 0.772 | 0.936 | 0.854 | 0.717 | 0.578 | 0.862 | 0.720 | 0.459 | |
12 | 0.821 | 0.924 | 0.872 | 0.749 | 0.634 | 0.921 | 0.777 | 0.579 | |
14 | 0.838 | 0.909 | 0.874 | 0.749 | 0.724 | 0.932 | 0.828 | 0.671 |