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Table 1 Running times for model ranking on TASSER target 256b_A

From: UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data

N_struct 2000 4000 8000 16,000
Profile preprocessing 13.8 51.6 132.0 231.0
uQlust:1D-CA-CM 0.6 1.2 3.0 6.6
PconsD 23.6 64.8 260.7 901.7
  1. Time in CPU sec on a server with 8 Intel (R) Core (TM)2 Q6600@2.0GHz CPUs, 4 GB, and Linux version Ubuntu 12.04. PconsD was allowed to use all 8 CPUs and the TESLA C2075 graphical card with 448 GPUs, while times for uQlust are for 1 CPU only to demonstrate its linear scaling